:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'surpyvor' .. highlight: bash surpyvor ======== .. conda:recipe:: surpyvor :replaces_section_title: :noindex: Evaluating\, merging and plotting SV vcf files :homepage: https://github.com/wdecoster/surpyvor :license: MIT / MIT License :recipe: /`surpyvor `_/`meta.yaml `_ :links: doi: :doi:`10.1101/gr.244939.118` .. conda:package:: surpyvor |downloads_surpyvor| |docker_surpyvor| :versions: .. raw:: html
0.15.0-00.14.0-00.13.0-00.12.0-00.11.0-00.10.0-00.8.1-10.8.1-00.6.0-1 ``0.15.0-0``,  ``0.14.0-0``,  ``0.13.0-0``,  ``0.12.0-0``,  ``0.11.0-0``,  ``0.10.0-0``,  ``0.8.1-1``,  ``0.8.1-0``,  ``0.6.0-1``,  ``0.6.0-0``,  ``0.5.0-1``,  ``0.5.0-0`` .. raw:: html
:depends bcftools: :depends cyvcf2: :depends htslib: :depends matplotlib-base: :depends matplotlib-venn: :depends numpy: :depends python: ``>=3`` :depends survivor: :depends upsetplot: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install surpyvor and update with:: mamba update surpyvor To create a new environment, run:: mamba create --name myenvname surpyvor with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/surpyvor: (see `surpyvor/tags`_ for valid values for ````) .. |downloads_surpyvor| image:: https://img.shields.io/conda/dn/bioconda/surpyvor.svg?style=flat :target: https://anaconda.org/bioconda/surpyvor :alt: (downloads) .. |docker_surpyvor| image:: https://quay.io/repository/biocontainers/surpyvor/status :target: https://quay.io/repository/biocontainers/surpyvor .. _`surpyvor/tags`: https://quay.io/repository/biocontainers/surpyvor?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/surpyvor/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/surpyvor/README.html