:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'svdb' .. highlight: bash svdb ==== .. conda:recipe:: svdb :replaces_section_title: :noindex: structural variant database software :homepage: https://github.com/J35P312/SVDB :license: MIT / MIT :recipe: /`svdb `_/`meta.yaml `_ .. conda:package:: svdb |downloads_svdb| |docker_svdb| :versions: .. raw:: html
2.8.2-12.8.2-02.8.1-12.8.1-02.7.1-02.7.0-02.6.4-12.6.4-02.6.2-0 ``2.8.2-1``,  ``2.8.2-0``,  ``2.8.1-1``,  ``2.8.1-0``,  ``2.7.1-0``,  ``2.7.0-0``,  ``2.6.4-1``,  ``2.6.4-0``,  ``2.6.2-0``,  ``2.6.1-0``,  ``2.6.0-0``,  ``2.5.2-1``,  ``2.5.2-0``,  ``2.5.1-0``,  ``2.5.0-1``,  ``2.5.0-0``,  ``2.4.0-4``,  ``2.4.0-3``,  ``2.4.0-2``,  ``2.4.0-1``,  ``2.4.0-0``,  ``2.3.0-0``,  ``2.2.0-0``,  ``2.1.1-0``,  ``1.3.0-1``,  ``1.3.0-0``,  ``1.1.2-0``,  ``1.0.7-2``,  ``1.0.7-1``,  ``1.0.7-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends numpy: ``>=1.21.6,<2.0a0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install svdb and update with:: mamba update svdb To create a new environment, run:: mamba create --name myenvname svdb with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/svdb: (see `svdb/tags`_ for valid values for ````) .. |downloads_svdb| image:: https://img.shields.io/conda/dn/bioconda/svdb.svg?style=flat :target: https://anaconda.org/bioconda/svdb :alt: (downloads) .. |docker_svdb| image:: https://quay.io/repository/biocontainers/svdb/status :target: https://quay.io/repository/biocontainers/svdb .. _`svdb/tags`: https://quay.io/repository/biocontainers/svdb?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/svdb/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/svdb/README.html