:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'svtools' .. highlight: bash svtools ======= .. conda:recipe:: svtools :replaces_section_title: :noindex: Tools for processing and analyzing structural variants :homepage: https://github.com/hall-lab/svtools :license: MIT / MIT License :recipe: /`svtools `_/`meta.yaml `_ .. conda:package:: svtools |downloads_svtools| |docker_svtools| :versions: .. raw:: html
0.5.1-00.4.0-20.3.2-20.3.2-00.3.1-30.3.1-20.3.1-10.3.0-20.3.0-1 ``0.5.1-0``,  ``0.4.0-2``,  ``0.3.2-2``,  ``0.3.2-0``,  ``0.3.1-3``,  ``0.3.1-2``,  ``0.3.1-1``,  ``0.3.0-2``,  ``0.3.0-1``,  ``0.2.0-2``,  ``0.2.0-1``,  ``0.2.0-0``,  ``0.1.1-2``,  ``0.1.1-0`` .. raw:: html
:depends crcmod: :depends google-auth: :depends google-compute-engine: :depends logzero: :depends numpy: :depends pandas: ``0.19.2.*`` :depends python: ``<3`` :depends scipy: :depends statsmodels: :depends svtyper: ``0.7.1.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install svtools and update with:: mamba update svtools To create a new environment, run:: mamba create --name myenvname svtools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/svtools: (see `svtools/tags`_ for valid values for ````) .. |downloads_svtools| image:: https://img.shields.io/conda/dn/bioconda/svtools.svg?style=flat :target: https://anaconda.org/bioconda/svtools :alt: (downloads) .. |docker_svtools| image:: https://quay.io/repository/biocontainers/svtools/status :target: https://quay.io/repository/biocontainers/svtools .. _`svtools/tags`: https://quay.io/repository/biocontainers/svtools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/svtools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/svtools/README.html