:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'svtyper' .. highlight: bash svtyper ======= .. conda:recipe:: svtyper :replaces_section_title: :noindex: Bayesian genotyper for structural variants :homepage: https://github.com/hall-lab/svtyper :license: MIT :recipe: /`svtyper `_/`meta.yaml `_ .. conda:package:: svtyper |downloads_svtyper| |docker_svtyper| :versions: .. raw:: html
0.7.1-00.7.0-10.7.0-00.6.1-10.6.1-00.1.4-00.1.1-00.0.4-00.0.2-4 ``0.7.1-0``,  ``0.7.0-1``,  ``0.7.0-0``,  ``0.6.1-1``,  ``0.6.1-0``,  ``0.1.4-0``,  ``0.1.1-0``,  ``0.0.4-0``,  ``0.0.2-4``,  ``0.0.2-3`` .. raw:: html
:depends cytoolz: ``>=0.8.2`` :depends numpy: :depends pysam: ``>=0.15.0`` :depends python: ``<3`` :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install svtyper and update with:: mamba update svtyper To create a new environment, run:: mamba create --name myenvname svtyper with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/svtyper: (see `svtyper/tags`_ for valid values for ````) .. |downloads_svtyper| image:: https://img.shields.io/conda/dn/bioconda/svtyper.svg?style=flat :target: https://anaconda.org/bioconda/svtyper :alt: (downloads) .. |docker_svtyper| image:: https://quay.io/repository/biocontainers/svtyper/status :target: https://quay.io/repository/biocontainers/svtyper .. _`svtyper/tags`: https://quay.io/repository/biocontainers/svtyper?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/svtyper/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/svtyper/README.html