:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'tf-comb'
.. highlight: bash

tf-comb
=======

.. conda:recipe:: tf-comb
   :replaces_section_title:
   :noindex:

   Transcription Factor Co\-Occurrence using Market Basket analysis

   :homepage: https://tf-comb.readthedocs.io/
   :developer docs: https://github.com/loosolab/TF-COMB/
   :license: MIT / MIT
   :recipe: /`tf-comb <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/tf-comb>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/tf-comb/meta.yaml>`_
   :links: doi: :doi:`10.1016/j.csbj.2022.07.025`

   


.. conda:package:: tf-comb

   |downloads_tf-comb| |docker_tf-comb|

   :versions:
      
      

      ``1.1-0``

      

   
   :depends dill: 
   :depends goatools: 
   :depends ipython: 
   :depends libgcc-ng: ``>=12``
   :depends matplotlib-base: ``>=2``
   :depends networkx: ``>=2.4``
   :depends numpy: ``>=1.21.6,<2.0a0``
   :depends pandas: 
   :depends pysam: 
   :depends python: ``>=3.10,<3.11.0a0``
   :depends python-graphviz: 
   :depends python-louvain: 
   :depends python_abi: ``3.10.* *_cp310``
   :depends qnorm: 
   :depends scipy: 
   :depends seaborn: 
   :depends statsmodels: 
   :depends tobias: ``>=0.11``
   :depends tqdm: 
   :depends uropa: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install tf-comb

   and update with::

      mamba update tf-comb

  To create a new environment, run::

      mamba create --name myenvname tf-comb

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/tf-comb:<tag>

   (see `tf-comb/tags`_ for valid values for ``<tag>``)


.. |downloads_tf-comb| image:: https://img.shields.io/conda/dn/bioconda/tf-comb.svg?style=flat
   :target: https://anaconda.org/bioconda/tf-comb
   :alt:   (downloads)
.. |docker_tf-comb| image:: https://quay.io/repository/biocontainers/tf-comb/status
   :target: https://quay.io/repository/biocontainers/tf-comb
.. _`tf-comb/tags`: https://quay.io/repository/biocontainers/tf-comb?tab=tags


.. raw:: html

    <script>
        var package = "tf-comb";
        var versions = ["1.1"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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