:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'tissuumaps'
.. highlight: bash

tissuumaps
==========

.. conda:recipe:: tissuumaps
   :replaces_section_title:
   :noindex:

   TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images


   :homepage: https://tissuumaps.research.it.uu.se/
   :license: MIT
   :recipe: /`tissuumaps <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/tissuumaps>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/tissuumaps/meta.yaml>`_
   :links: doi: :doi:`10.1101/2022.01.28.478131`

   


.. conda:package:: tissuumaps

   |downloads_tissuumaps| |docker_tissuumaps|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>3.2.1.8-0</code>,  <code>3.2.1.7-0</code>,  <code>3.2.1.6-0</code>,  <code>3.2.1.5-0</code>,  <code>3.2.1.4-0</code>,  <code>3.2.1.3-0</code>,  <code>3.2.1.2-0</code>,  <code>3.2.1.1-0</code>,  <code>3.2.0.5-0</code>,  </span></summary>
      

      ``3.2.1.8-0``,  ``3.2.1.7-0``,  ``3.2.1.6-0``,  ``3.2.1.5-0``,  ``3.2.1.4-0``,  ``3.2.1.3-0``,  ``3.2.1.2-0``,  ``3.2.1.1-0``,  ``3.2.0.5-0``,  ``3.2.0.4-0``,  ``3.2.0.3-0``,  ``3.2.0.2-0``,  ``3.2.0.1-0``,  ``3.2-0``,  ``3.1.1.6-0``

      
      .. raw:: html

         </details>
      

   
   :depends flask: ``>=2``
   :depends h5py: ``>=3.6.0``
   :depends ipython: ``>=7.0``
   :depends openslide-python: ``>=1.1.2``
   :depends pillow: ``>=8.2.0``
   :depends python: 
   :depends pyvips: 
   :depends pyyaml: ``>=6.0``
   :depends scipy: ``>=1.7.2``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install tissuumaps

   and update with::

      mamba update tissuumaps

  To create a new environment, run::

      mamba create --name myenvname tissuumaps

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/tissuumaps:<tag>

   (see `tissuumaps/tags`_ for valid values for ``<tag>``)


.. |downloads_tissuumaps| image:: https://img.shields.io/conda/dn/bioconda/tissuumaps.svg?style=flat
   :target: https://anaconda.org/bioconda/tissuumaps
   :alt:   (downloads)
.. |docker_tissuumaps| image:: https://quay.io/repository/biocontainers/tissuumaps/status
   :target: https://quay.io/repository/biocontainers/tissuumaps
.. _`tissuumaps/tags`: https://quay.io/repository/biocontainers/tissuumaps?tab=tags


.. raw:: html

    <script>
        var package = "tissuumaps";
        var versions = ["3.2.1.8","3.2.1.7","3.2.1.6","3.2.1.5","3.2.1.4"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tissuumaps/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/tissuumaps/README.html