:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'titanomics' .. highlight: bash titanomics ========== .. conda:recipe:: titanomics :replaces_section_title: :noindex: A comprehensive multi\-omics data analysis pipeline. :homepage: https://github.com/raw-lab/titan :license: BSD / BSD :recipe: /`titanomics `_/`meta.yaml `_ .. conda:package:: titanomics |downloads_titanomics| |docker_titanomics| :versions: ``0.1-0`` :depends bowtie2: :depends configargparse: :depends fastp: :depends fastqc: :depends flash2: :depends flye: :depends grpcio: ``<=1.43`` :depends megahit: :depends metaomestats: :depends psutil: :depends python: :depends ray-core: :depends ray-dashboard: :depends samtools: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install titanomics and update with:: mamba update titanomics To create a new environment, run:: mamba create --name myenvname titanomics with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/titanomics: (see `titanomics/tags`_ for valid values for ````) .. |downloads_titanomics| image:: https://img.shields.io/conda/dn/bioconda/titanomics.svg?style=flat :target: https://anaconda.org/bioconda/titanomics :alt: (downloads) .. |docker_titanomics| image:: https://quay.io/repository/biocontainers/titanomics/status :target: https://quay.io/repository/biocontainers/titanomics .. _`titanomics/tags`: https://quay.io/repository/biocontainers/titanomics?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/titanomics/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/titanomics/README.html