:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'treekin' .. highlight: bash treekin ======= .. conda:recipe:: treekin :replaces_section_title: :noindex: Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process :homepage: https://www.tbi.univie.ac.at/RNA/Treekin/ :license: GPL :recipe: /`treekin `_/`meta.yaml `_ .. conda:package:: treekin |downloads_treekin| |docker_treekin| :versions: .. raw:: html
0.5.1-40.5.1-30.5.1-20.5.1-10.5.1-00.4.2-20.4.2-10.4.2-00.3.1-3 ``0.5.1-4``,  ``0.5.1-3``,  ``0.5.1-2``,  ``0.5.1-1``,  ``0.5.1-0``,  ``0.4.2-2``,  ``0.4.2-1``,  ``0.4.2-0``,  ``0.3.1-3``,  ``0.3.1-2``,  ``0.3.1-1`` .. raw:: html
:depends lapack: ``<3.9`` :depends libgcc-ng: ``>=12`` :depends libgfortran-ng: :depends libgfortran5: ``>=12.2.0`` :depends libstdcxx-ng: ``>=12`` :depends mlapack: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install treekin and update with:: mamba update treekin To create a new environment, run:: mamba create --name myenvname treekin with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/treekin: (see `treekin/tags`_ for valid values for ````) .. |downloads_treekin| image:: https://img.shields.io/conda/dn/bioconda/treekin.svg?style=flat :target: https://anaconda.org/bioconda/treekin :alt: (downloads) .. |docker_treekin| image:: https://quay.io/repository/biocontainers/treekin/status :target: https://quay.io/repository/biocontainers/treekin .. _`treekin/tags`: https://quay.io/repository/biocontainers/treekin?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/treekin/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/treekin/README.html