:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'trnascan-se' .. highlight: bash trnascan-se =========== .. conda:recipe:: trnascan-se :replaces_section_title: :noindex: tRNA detection in large\-scale genomic sequences :homepage: http://lowelab.ucsc.edu/tRNAscan-SE/ :documentation: http://lowelab.ucsc.edu/tRNAscan-SE/help.html :license: GPLv3 :recipe: /`trnascan-se `_/`meta.yaml `_ :links: biotools: :biotools:`trnascan-se`, doi: :doi:`10.1093/nar/gkab688` .. conda:package:: trnascan-se |downloads_trnascan-se| |docker_trnascan-se| :versions: .. raw:: html
2.0.12-02.0.11-12.0.11-02.0.9-32.0.9-22.0.9-12.0.9-02.0.7-12.0.7-0 ``2.0.12-0``,  ``2.0.11-1``,  ``2.0.11-0``,  ``2.0.9-3``,  ``2.0.9-2``,  ``2.0.9-1``,  ``2.0.9-0``,  ``2.0.7-1``,  ``2.0.7-0``,  ``2.0.6-0``,  ``2.0.5-0``,  ``2.0.3-0``,  ``2.0-1``,  ``2.0-0``,  ``1.3.1-10``,  ``1.3.1-9``,  ``1.3.1-8``,  ``1.3.1-7``,  ``1.3.1-6``,  ``1.3.1-5``,  ``1.3.1-4``,  ``1.3.1-3``,  ``1.3.1-2``,  ``1.3.1-1`` .. raw:: html
:depends infernal: ``>=1.1.4`` :depends libgcc-ng: ``>=12`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install trnascan-se and update with:: mamba update trnascan-se To create a new environment, run:: mamba create --name myenvname trnascan-se with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/trnascan-se: (see `trnascan-se/tags`_ for valid values for ````) .. |downloads_trnascan-se| image:: https://img.shields.io/conda/dn/bioconda/trnascan-se.svg?style=flat :target: https://anaconda.org/bioconda/trnascan-se :alt: (downloads) .. |docker_trnascan-se| image:: https://quay.io/repository/biocontainers/trnascan-se/status :target: https://quay.io/repository/biocontainers/trnascan-se .. _`trnascan-se/tags`: https://quay.io/repository/biocontainers/trnascan-se?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trnascan-se/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/trnascan-se/README.html