:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'tssar' .. highlight: bash tssar ===== .. conda:recipe:: tssar :replaces_section_title: :noindex: TSSAR is a Web Service for predicting bacterial Transcription Start Sites from dRNA\-seq data. :homepage: http://rna.tbi.univie.ac.at/TSSAR :license: GNU General Public License v2.0 :recipe: /`tssar `_/`meta.yaml `_ .. conda:package:: tssar |downloads_tssar| |docker_tssar| :versions: ``1.0.1-7``,  ``1.0.1-6``,  ``1.0.1-5``,  ``1.0.1-4``,  ``1.0.1-3``,  ``1.0.1-2``,  ``1.0.1-1``,  ``1.0.1-0`` :depends libgcc-ng: ``>=12`` :depends perl: :depends r-base: ``>=4.2,<4.3.0a0`` :depends r-skellam: :depends r-vgam: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install tssar and update with:: mamba update tssar To create a new environment, run:: mamba create --name myenvname tssar with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/tssar: (see `tssar/tags`_ for valid values for ````) .. |downloads_tssar| image:: https://img.shields.io/conda/dn/bioconda/tssar.svg?style=flat :target: https://anaconda.org/bioconda/tssar :alt: (downloads) .. |docker_tssar| image:: https://quay.io/repository/biocontainers/tssar/status :target: https://quay.io/repository/biocontainers/tssar .. _`tssar/tags`: https://quay.io/repository/biocontainers/tssar?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tssar/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/tssar/README.html