:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ucsc-cell-browser' .. highlight: bash ucsc-cell-browser ================= .. conda:recipe:: ucsc-cell-browser :replaces_section_title: :noindex: A browser for single\-cell data\, main site at http\:\/\/cells.ucsc.edu. UCSC Cellbrowser\, an interactive browser for single cell data. Includes importers and basic pipelines for text files\, Seurat\, Scanpy and Cellranger. All Javascript \- does not require a server backend. :homepage: https://cells.ucsc.edu :documentation: https://cellbrowser.readthedocs.io/en/master/ :developer docs: https://github.com/maximilianh/cellBrowser :license: GPL3 / GPL-3.0-or-later :recipe: /`ucsc-cell-browser `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btab503` .. conda:package:: ucsc-cell-browser |downloads_ucsc-cell-browser| |docker_ucsc-cell-browser| :versions: .. raw:: html
1.2.5-01.2.4-01.2.3-01.2.2-01.1.1-11.1.1-01.1.0-01.0.1-01.0.0-0 ``1.2.5-0``,  ``1.2.4-0``,  ``1.2.3-0``,  ``1.2.2-0``,  ``1.1.1-1``,  ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.1-0``,  ``1.0.0-0``,  ``0.7.15-0``,  ``0.7.14-0``,  ``0.7.13-0``,  ``0.7.11-0``,  ``0.7.10-0``,  ``0.7.9-0``,  ``0.7.8-0``,  ``0.7.7-0``,  ``0.7.6-0``,  ``0.7.5-0``,  ``0.7.4-0``,  ``0.7.3-0``,  ``0.7.2-0``,  ``0.7.1-0``,  ``0.7-0``,  ``0.5.49-0``,  ``0.5.46-0``,  ``0.5.45-0``,  ``0.5.43-1``,  ``0.5.43-0``,  ``0.5.38-0``,  ``0.5.37-0``,  ``0.5.21-0``,  ``0.4.56-0``,  ``0.4.38-0``,  ``0.4.35-0``,  ``0.4.23-1``,  ``0.4.23-0`` .. raw:: html
:depends anndata: :depends numpy: :depends python: ``>=3.6,<3.12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ucsc-cell-browser and update with:: mamba update ucsc-cell-browser To create a new environment, run:: mamba create --name myenvname ucsc-cell-browser with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ucsc-cell-browser: (see `ucsc-cell-browser/tags`_ for valid values for ````) .. |downloads_ucsc-cell-browser| image:: https://img.shields.io/conda/dn/bioconda/ucsc-cell-browser.svg?style=flat :target: https://anaconda.org/bioconda/ucsc-cell-browser :alt: (downloads) .. |docker_ucsc-cell-browser| image:: https://quay.io/repository/biocontainers/ucsc-cell-browser/status :target: https://quay.io/repository/biocontainers/ucsc-cell-browser .. _`ucsc-cell-browser/tags`: https://quay.io/repository/biocontainers/ucsc-cell-browser?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ucsc-cell-browser/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ucsc-cell-browser/README.html