:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ucsc-chainsort' .. highlight: bash ucsc-chainsort ============== .. conda:recipe:: ucsc-chainsort :replaces_section_title: :noindex: Sort chains. By default sorts by score. :homepage: http://hgdownload.cse.ucsc.edu/admin/exe/ :license: varies; see http://genome.ucsc.edu/license :recipe: /`ucsc-chainsort `_/`meta.yaml `_ .. conda:package:: ucsc-chainsort |downloads_ucsc-chainsort| |docker_ucsc-chainsort| :versions: .. raw:: html
455-0377-3377-2377-1377-0366-0357-2357-1357-0 ``455-0``,  ``377-3``,  ``377-2``,  ``377-1``,  ``377-0``,  ``366-0``,  ``357-2``,  ``357-1``,  ``357-0``,  ``332-0``,  ``324-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libpng: ``>=1.6.39,<1.7.0a0`` :depends libstdcxx-ng: ``>=12`` :depends libuuid: ``>=2.38.1,<3.0a0`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends mysql-connector-c: ``>=6.1.11,<6.1.12.0a0`` :depends openssl: ``>=3.1.4,<4.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ucsc-chainsort and update with:: mamba update ucsc-chainsort To create a new environment, run:: mamba create --name myenvname ucsc-chainsort with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ucsc-chainsort: (see `ucsc-chainsort/tags`_ for valid values for ````) .. |downloads_ucsc-chainsort| image:: https://img.shields.io/conda/dn/bioconda/ucsc-chainsort.svg?style=flat :target: https://anaconda.org/bioconda/ucsc-chainsort :alt: (downloads) .. |docker_ucsc-chainsort| image:: https://quay.io/repository/biocontainers/ucsc-chainsort/status :target: https://quay.io/repository/biocontainers/ucsc-chainsort .. _`ucsc-chainsort/tags`: https://quay.io/repository/biocontainers/ucsc-chainsort?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ucsc-chainsort/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ucsc-chainsort/README.html