:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'umap' .. highlight: bash umap ==== .. conda:recipe:: umap :replaces_section_title: :noindex: Umap and Bismap\: tools for genome and methylome mappability :homepage: https://bitbucket.org/hoffmanlab/umap/ :license: GNU General Public License v3 (GPLv3) :recipe: /`umap `_/`meta.yaml `_ .. conda:package:: umap |downloads_umap| |docker_umap| :versions: ``1.1.1-0`` :depends argparse: :depends bowtie: :depends numpy: :depends pandas: :depends python: ``<3`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install umap and update with:: mamba update umap To create a new environment, run:: mamba create --name myenvname umap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/umap: (see `umap/tags`_ for valid values for ````) .. |downloads_umap| image:: https://img.shields.io/conda/dn/bioconda/umap.svg?style=flat :target: https://anaconda.org/bioconda/umap :alt: (downloads) .. |docker_umap| image:: https://quay.io/repository/biocontainers/umap/status :target: https://quay.io/repository/biocontainers/umap .. _`umap/tags`: https://quay.io/repository/biocontainers/umap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/umap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/umap/README.html