:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'unicycler' .. highlight: bash unicycler ========= .. conda:recipe:: unicycler :replaces_section_title: :noindex: Hybrid assembly pipeline for bacterial genomes :homepage: https://github.com/rrwick/Unicycler :license: GPL / GPL-3.0 :recipe: /`unicycler `_/`meta.yaml `_ :links: biotools: :biotools:`unicycler`, usegalaxy-eu: :usegalaxy-eu:`unicycler` .. conda:package:: unicycler |downloads_unicycler| |docker_unicycler| :versions: .. raw:: html
0.5.0-30.5.0-20.5.0-10.5.0-00.4.8-50.4.8-40.4.8-30.4.8-20.4.8-1 ``0.5.0-3``,  ``0.5.0-2``,  ``0.5.0-1``,  ``0.5.0-0``,  ``0.4.8-5``,  ``0.4.8-4``,  ``0.4.8-3``,  ``0.4.8-2``,  ``0.4.8-1``,  ``0.4.8-0``,  ``0.4.7-1``,  ``0.4.7-0``,  ``0.4.6-0``,  ``0.4.4-6``,  ``0.4.4-5``,  ``0.4.4-4``,  ``0.4.4-3``,  ``0.4.4-2``,  ``0.4.4-1``,  ``0.4.4-0``,  ``0.4.1-0``,  ``0.3.0b-1``,  ``0.3.0b-0``,  ``0.2.0-0`` .. raw:: html
:depends blast: :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends miniasm: :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends racon: :depends spades: ``>=3.15.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install unicycler and update with:: mamba update unicycler To create a new environment, run:: mamba create --name myenvname unicycler with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/unicycler: (see `unicycler/tags`_ for valid values for ````) .. |downloads_unicycler| image:: https://img.shields.io/conda/dn/bioconda/unicycler.svg?style=flat :target: https://anaconda.org/bioconda/unicycler :alt: (downloads) .. |docker_unicycler| image:: https://quay.io/repository/biocontainers/unicycler/status :target: https://quay.io/repository/biocontainers/unicycler .. _`unicycler/tags`: https://quay.io/repository/biocontainers/unicycler?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/unicycler/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/unicycler/README.html