:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'unitig-caller' .. highlight: bash unitig-caller ============= .. conda:recipe:: unitig-caller :replaces_section_title: :noindex: Determines presence\/absence of sequence elements in bacterial sequence data. :homepage: https://github.com/bacpop/unitig-caller :license: APACHE / Apache-2.0 :recipe: /`unitig-caller `_/`meta.yaml `_ .. conda:package:: unitig-caller |downloads_unitig-caller| |docker_unitig-caller| :versions: .. raw:: html
1.3.0-31.3.0-21.3.0-11.3.0-01.2.1-11.2.1-01.2.0-21.2.0-11.2.0-0 ``1.3.0-3``,  ``1.3.0-2``,  ``1.3.0-1``,  ``1.3.0-0``,  ``1.2.1-1``,  ``1.2.1-0``,  ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.1-0``,  ``1.0.0-0``,  ``0.2.0-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends bifrost: ``>=1.3.0`` :depends bifrost: ``>=1.3.1,<1.4.0a0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install unitig-caller and update with:: mamba update unitig-caller To create a new environment, run:: mamba create --name myenvname unitig-caller with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/unitig-caller: (see `unitig-caller/tags`_ for valid values for ````) .. |downloads_unitig-caller| image:: https://img.shields.io/conda/dn/bioconda/unitig-caller.svg?style=flat :target: https://anaconda.org/bioconda/unitig-caller :alt: (downloads) .. |docker_unitig-caller| image:: https://quay.io/repository/biocontainers/unitig-caller/status :target: https://quay.io/repository/biocontainers/unitig-caller .. _`unitig-caller/tags`: https://quay.io/repository/biocontainers/unitig-caller?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/unitig-caller/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/unitig-caller/README.html