:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'updio' .. highlight: bash updio ===== .. conda:recipe:: updio :replaces_section_title: :noindex: UPDio is designed to identify uniparental disomy in probands of trio VCF data. :homepage: https://github.com/rhpvorderman/updio :license: gpl-2.0-or-later :recipe: /`updio `_/`meta.yaml `_ .. conda:package:: updio |downloads_updio| |docker_updio| :versions: ``1.1.0-0`` :depends bioconductor-quantsmooth: :depends perl: ``<6`` :depends perl-iterator-simple: :depends perl-list-moreutils: :depends perl-math-round: :depends perl-path-class: :depends perl-statistics-r: :depends perl-vcftools-vcf: :depends r-ggplot2: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install updio and update with:: mamba update updio To create a new environment, run:: mamba create --name myenvname updio with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/updio: (see `updio/tags`_ for valid values for ````) .. |downloads_updio| image:: https://img.shields.io/conda/dn/bioconda/updio.svg?style=flat :target: https://anaconda.org/bioconda/updio :alt: (downloads) .. |docker_updio| image:: https://quay.io/repository/biocontainers/updio/status :target: https://quay.io/repository/biocontainers/updio .. _`updio/tags`: https://quay.io/repository/biocontainers/updio?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/updio/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/updio/README.html