:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'vamb' .. highlight: bash vamb ==== .. conda:recipe:: vamb :replaces_section_title: :noindex: Variational autoencoder for metagenomic binning :homepage: https://github.com/RasmussenLab/vamb :license: MIT / MIT License :recipe: /`vamb `_/`meta.yaml `_ .. conda:package:: vamb |downloads_vamb| |docker_vamb| :versions: ``3.0.2-2``,  ``3.0.2-1``,  ``3.0.2-0``,  ``3.0.1-1``,  ``3.0.1-0``,  ``2.1.0-0``,  ``2.0.1-0`` :depends libgcc-ng: ``>=10.3.0`` :depends numpy: ``>=1.15`` :depends pysam: ``>=0.14`` :depends python: ``>=3.6,<3.7.0a0`` :depends python_abi: ``3.6.* *_cp36m`` :depends pytorch-cpu: ``>=0.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install vamb and update with:: mamba update vamb To create a new environment, run:: mamba create --name myenvname vamb with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/vamb: (see `vamb/tags`_ for valid values for ````) .. |downloads_vamb| image:: https://img.shields.io/conda/dn/bioconda/vamb.svg?style=flat :target: https://anaconda.org/bioconda/vamb :alt: (downloads) .. |docker_vamb| image:: https://quay.io/repository/biocontainers/vamb/status :target: https://quay.io/repository/biocontainers/vamb .. _`vamb/tags`: https://quay.io/repository/biocontainers/vamb?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vamb/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/vamb/README.html