:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'vibrant' .. highlight: bash vibrant ======= .. conda:recipe:: vibrant :replaces_section_title: :noindex: Virus Identification By iteRative ANnoTation :homepage: https://github.com/AnantharamanLab/VIBRANT :license: GPL / GPL-3.0 :recipe: /`vibrant `_/`meta.yaml `_ :links: doi: :doi:`10.1101/855387` .. conda:package:: vibrant |downloads_vibrant| |docker_vibrant| :versions: .. raw:: html
1.2.1-41.2.1-31.2.1-21.2.1-11.2.1-01.2.0-21.2.0-11.2.0-01.0.1-2 ``1.2.1-4``,  ``1.2.1-3``,  ``1.2.1-2``,  ``1.2.1-1``,  ``1.2.1-0``,  ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.1-2``,  ``1.0.1-1``,  ``1.0.1-0`` .. raw:: html
:depends biopython: :depends coreutils: :depends gzip: :depends hmmer: ``>=3.2.1`` :depends matplotlib-base: :depends numpy: ``>=1.17.0`` :depends pandas: ``<1`` :depends prodigal: :depends python: ``>=3.5`` :depends scikit-learn: ``0.21.3.*`` :depends seaborn: :depends wget: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install vibrant and update with:: mamba update vibrant To create a new environment, run:: mamba create --name myenvname vibrant with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/vibrant: (see `vibrant/tags`_ for valid values for ````) .. |downloads_vibrant| image:: https://img.shields.io/conda/dn/bioconda/vibrant.svg?style=flat :target: https://anaconda.org/bioconda/vibrant :alt: (downloads) .. |docker_vibrant| image:: https://quay.io/repository/biocontainers/vibrant/status :target: https://quay.io/repository/biocontainers/vibrant .. _`vibrant/tags`: https://quay.io/repository/biocontainers/vibrant?tab=tags .. raw:: html Notes ----- Read post\-link.sh on how to download 11GB required data files. Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vibrant/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/vibrant/README.html