:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'virsorter' .. highlight: bash virsorter ========= .. conda:recipe:: virsorter :replaces_section_title: :noindex: VirSorter2 \-\- A multi\-classifier\, expert\-guided approach to detect diverse DNA and RNA virus genomes :homepage: https://github.com/jiarong/VirSorter2 :developer docs: https://github.com/jiarong/VirSorter2/virsorter :license: GPL / GPL-2.0 :recipe: /`virsorter `_/`meta.yaml `_ .. conda:package:: virsorter |downloads_virsorter| |docker_virsorter| :versions: .. raw:: html
2.2.4-12.2.4-02.2.3-12.2.3-02.2.2-02.2.1-02.2-02.1-02.0-0 ``2.2.4-1``,  ``2.2.4-0``,  ``2.2.3-1``,  ``2.2.3-0``,  ``2.2.2-0``,  ``2.2.1-0``,  ``2.2-0``,  ``2.1-0``,  ``2.0-0``,  ``2.0.beta-1``,  ``2.0.beta-0``,  ``2.0.alpha-2``,  ``2.0.alpha-1``,  ``2.0.alpha-0``,  ``1.0.6-1``,  ``1.0.6-0``,  ``1.0.5-4``,  ``1.0.5-3``,  ``1.0.5-2``,  ``1.0.5-1``,  ``1.0.5-0`` .. raw:: html
:depends click: ``>=7`` :depends conda-package-handling: ``<=1.9`` :depends cookiecutter: :depends git: :depends mamba: :depends python: ``>=3.6,<=3.10`` :depends ruamel.yaml: ``0.16.*`` :depends snakemake-minimal: ``>=5.18,<=5.26`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install virsorter and update with:: mamba update virsorter To create a new environment, run:: mamba create --name myenvname virsorter with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/virsorter: (see `virsorter/tags`_ for valid values for ````) .. |downloads_virsorter| image:: https://img.shields.io/conda/dn/bioconda/virsorter.svg?style=flat :target: https://anaconda.org/bioconda/virsorter :alt: (downloads) .. |docker_virsorter| image:: https://quay.io/repository/biocontainers/virsorter/status :target: https://quay.io/repository/biocontainers/virsorter .. _`virsorter/tags`: https://quay.io/repository/biocontainers/virsorter?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/virsorter/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/virsorter/README.html