:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'vrhyme' .. highlight: bash vrhyme ====== .. conda:recipe:: vrhyme :replaces_section_title: :noindex: Binning Virus Genomes from Metagenomes. :homepage: https://github.com/AnantharamanLab/vRhyme :license: GPL / GPL-3.0 :recipe: /`vrhyme `_/`meta.yaml `_ :links: doi: :doi:`10.1093/nar/gkac341` .. conda:package:: vrhyme |downloads_vrhyme| |docker_vrhyme| :versions: ``1.1.0-1``,  ``1.1.0-0`` :depends bowtie2: :depends bwa: :depends mash: :depends mmseqs2: :depends networkx: :depends numba: :depends numpy: :depends pandas: :depends prodigal: :depends pysam: :depends python: ``>=3.6`` :depends samtools: :depends scikit-learn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install vrhyme and update with:: mamba update vrhyme To create a new environment, run:: mamba create --name myenvname vrhyme with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/vrhyme: (see `vrhyme/tags`_ for valid values for ````) .. |downloads_vrhyme| image:: https://img.shields.io/conda/dn/bioconda/vrhyme.svg?style=flat :target: https://anaconda.org/bioconda/vrhyme :alt: (downloads) .. |docker_vrhyme| image:: https://quay.io/repository/biocontainers/vrhyme/status :target: https://quay.io/repository/biocontainers/vrhyme .. _`vrhyme/tags`: https://quay.io/repository/biocontainers/vrhyme?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vrhyme/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/vrhyme/README.html