:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'w4mclstrpeakpics' .. highlight: bash w4mclstrpeakpics ================ .. conda:recipe:: w4mclstrpeakpics :replaces_section_title: :noindex: Visualize W4M sample\-cluster peaks \- Produce a figure to assess the similarities and differences among peaks in a cluster of samples using XCMS\-preprocessed data files as input. MIT Licence allows redistribution. :homepage: https://github.com/HegemanLab/w4mclstrpeakpics :license: MIT :recipe: /`w4mclstrpeakpics `_/`meta.yaml `_ .. conda:package:: w4mclstrpeakpics |downloads_w4mclstrpeakpics| |docker_w4mclstrpeakpics| :versions: ``0.98.1-1``,  ``0.98.1-0`` :depends r-base: ``>=3.4.1,<3.4.2.0a0`` :depends r-batch: :depends r-reshape2: :depends r-sqldf: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install w4mclstrpeakpics and update with:: mamba update w4mclstrpeakpics To create a new environment, run:: mamba create --name myenvname w4mclstrpeakpics with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/w4mclstrpeakpics: (see `w4mclstrpeakpics/tags`_ for valid values for ````) .. |downloads_w4mclstrpeakpics| image:: https://img.shields.io/conda/dn/bioconda/w4mclstrpeakpics.svg?style=flat :target: https://anaconda.org/bioconda/w4mclstrpeakpics :alt: (downloads) .. |docker_w4mclstrpeakpics| image:: https://quay.io/repository/biocontainers/w4mclstrpeakpics/status :target: https://quay.io/repository/biocontainers/w4mclstrpeakpics .. _`w4mclstrpeakpics/tags`: https://quay.io/repository/biocontainers/w4mclstrpeakpics?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/w4mclstrpeakpics/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/w4mclstrpeakpics/README.html