:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'wgdi' .. highlight: bash wgdi ==== .. conda:recipe:: wgdi :replaces_section_title: :noindex: Whole Genome Duplication Identification :homepage: https://github.com/SunPengChuan/wgdi :license: BSD / BSD-2-Clause :recipe: /`wgdi `_/`meta.yaml `_ Python utility libraries on comparative genomics .. conda:package:: wgdi |downloads_wgdi| |docker_wgdi| :versions: .. raw:: html
0.6.5-00.6.4-00.6.3-00.6.2-00.6.1-00.6.0-00.5.9-00.5.8-00.5.7-0 ``0.6.5-0``,  ``0.6.4-0``,  ``0.6.3-0``,  ``0.6.2-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.9-0``,  ``0.5.8-0``,  ``0.5.7-0``,  ``0.5.6-0``,  ``0.5.4-0``,  ``0.5.3-0``,  ``0.5.2-0``,  ``0.5.1-1``,  ``0.5.1-0``,  ``0.4.9-0``,  ``0.4.7-0``,  ``0.4.6-0``,  ``0.4.5-0``,  ``0.4.4-0``,  ``0.4.1-0`` .. raw:: html
:depends biopython: :depends divvier: ``1.01`` :depends fasttree: :depends iqtree: :depends mafft: :depends matplotlib-base: :depends muscle: ``3.8.1551`` :depends numpy: :depends pal2nal: :depends paml: :depends pandas: ``>=1.1.0`` :depends python: ``>=3`` :depends scipy: :depends trimal: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install wgdi and update with:: mamba update wgdi To create a new environment, run:: mamba create --name myenvname wgdi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/wgdi: (see `wgdi/tags`_ for valid values for ````) .. |downloads_wgdi| image:: https://img.shields.io/conda/dn/bioconda/wgdi.svg?style=flat :target: https://anaconda.org/bioconda/wgdi :alt: (downloads) .. |docker_wgdi| image:: https://quay.io/repository/biocontainers/wgdi/status :target: https://quay.io/repository/biocontainers/wgdi .. _`wgdi/tags`: https://quay.io/repository/biocontainers/wgdi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wgdi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/wgdi/README.html