:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'wisecondorx' .. highlight: bash wisecondorx =========== .. conda:recipe:: wisecondorx :replaces_section_title: :noindex: WIthin\-SamplE COpy Number aberration DetectOR\, including sex chromosomes :homepage: https://github.com/CenterForMedicalGeneticsGhent/wisecondorX :license: Attribution-NonCommercial-ShareAlike CC BY-NC-SA :recipe: /`wisecondorx `_/`meta.yaml `_ .. conda:package:: wisecondorx |downloads_wisecondorx| |docker_wisecondorx| :versions: .. raw:: html
1.2.5-01.2.4-01.2.2-01.2.0-01.1.5-11.1.5-01.1.0-21.1.0-11.1.0-0 ``1.2.5-0``,  ``1.2.4-0``,  ``1.2.2-0``,  ``1.2.0-0``,  ``1.1.5-1``,  ``1.1.5-0``,  ``1.1.0-2``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``1.0.0-0``,  ``0.2.1-0``,  ``0.2.0-1``,  ``0.1.0-2``,  ``0.1.0-1``,  ``0.1.0-0`` .. raw:: html
:depends bioconductor-dnacopy: :depends matplotlib-base: :depends numpy: :depends pysam: :depends python: :depends r-jsonlite: ``>=1.5`` :depends r-png: :depends scikit-learn: :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install wisecondorx and update with:: mamba update wisecondorx To create a new environment, run:: mamba create --name myenvname wisecondorx with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/wisecondorx: (see `wisecondorx/tags`_ for valid values for ````) .. |downloads_wisecondorx| image:: https://img.shields.io/conda/dn/bioconda/wisecondorx.svg?style=flat :target: https://anaconda.org/bioconda/wisecondorx :alt: (downloads) .. |docker_wisecondorx| image:: https://quay.io/repository/biocontainers/wisecondorx/status :target: https://quay.io/repository/biocontainers/wisecondorx .. _`wisecondorx/tags`: https://quay.io/repository/biocontainers/wisecondorx?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wisecondorx/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/wisecondorx/README.html