:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'wtdbg' .. highlight: bash wtdbg ===== .. conda:recipe:: wtdbg :replaces_section_title: :noindex: Wtdbg2\: A fuzzy Bruijn graph approach to long noisy reads assembly :homepage: https://github.com/ruanjue/wtdbg2 :license: GPL / GPL-3.0+ :recipe: /`wtdbg `_/`meta.yaml `_ .. conda:package:: wtdbg |downloads_wtdbg| |docker_wtdbg| :versions: .. raw:: html
2.5-42.5-32.5-22.5-12.5-02.3-02.1-02.0-01.2.8.1-2 ``2.5-4``,  ``2.5-3``,  ``2.5-2``,  ``2.5-1``,  ``2.5-0``,  ``2.3-0``,  ``2.1-0``,  ``2.0-0``,  ``1.2.8.1-2``,  ``1.2.8.1-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install wtdbg and update with:: mamba update wtdbg To create a new environment, run:: mamba create --name myenvname wtdbg with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/wtdbg: (see `wtdbg/tags`_ for valid values for ````) .. |downloads_wtdbg| image:: https://img.shields.io/conda/dn/bioconda/wtdbg.svg?style=flat :target: https://anaconda.org/bioconda/wtdbg :alt: (downloads) .. |docker_wtdbg| image:: https://quay.io/repository/biocontainers/wtdbg/status :target: https://quay.io/repository/biocontainers/wtdbg .. _`wtdbg/tags`: https://quay.io/repository/biocontainers/wtdbg?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wtdbg/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/wtdbg/README.html