:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'xbioc' .. highlight: bash xbioc ===== .. conda:recipe:: xbioc :replaces_section_title: :noindex: Extra Base Functions for Bioconductor :homepage: https://github.com/renozao/xbioc :license: GPL (>= 3) :recipe: /`xbioc `_/`meta.yaml `_ .. conda:package:: xbioc |downloads_xbioc| |docker_xbioc| :versions: ``0.1.19-3``,  ``0.1.19-2``,  ``0.1.19-1``,  ``0.1.19-0``,  ``0.1.18-2``,  ``0.1.18-1``,  ``0.1.18-0``,  ``0.1.16-0`` :depends bioconductor-annotationdbi: :depends bioconductor-biobase: :depends r-assertthat: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-biocmanager: :depends r-checkmate: :depends r-digest: :depends r-pkgmaker: ``>=0.26.6`` :depends r-plyr: :depends r-reshape2: :depends r-stringr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install xbioc and update with:: mamba update xbioc To create a new environment, run:: mamba create --name myenvname xbioc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/xbioc: (see `xbioc/tags`_ for valid values for ````) .. |downloads_xbioc| image:: https://img.shields.io/conda/dn/bioconda/xbioc.svg?style=flat :target: https://anaconda.org/bioconda/xbioc :alt: (downloads) .. |docker_xbioc| image:: https://quay.io/repository/biocontainers/xbioc/status :target: https://quay.io/repository/biocontainers/xbioc .. _`xbioc/tags`: https://quay.io/repository/biocontainers/xbioc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/xbioc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/xbioc/README.html