:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'yacrd' .. highlight: bash yacrd ===== .. conda:recipe:: yacrd :replaces_section_title: :noindex: Yet Another Chimeric Read Detector\, with long\-read mapper result as input. :homepage: https://github.com/natir/yacrd :license: MIT / MIT :recipe: /`yacrd `_/`meta.yaml `_ .. conda:package:: yacrd |downloads_yacrd| |docker_yacrd| :versions: .. raw:: html
1.0.0-21.0.0-11.0.0-00.6.2-20.6.2-10.6.2-00.6.1-00.6.0-00.5.1-7 ``1.0.0-2``,  ``1.0.0-1``,  ``1.0.0-0``,  ``0.6.2-2``,  ``0.6.2-1``,  ``0.6.2-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.1-7``,  ``0.5.1-6``,  ``0.5.1-5``,  ``0.5.1-4``,  ``0.5.1-3``,  ``0.5.1-2``,  ``0.5.1-1``,  ``0.4.1-7``,  ``0.4.1-6``,  ``0.4.1-5``,  ``0.4.1-4``,  ``0.4.1-3``,  ``0.4.1-2``,  ``0.4.1-1``,  ``0.4-1``,  ``0.3-1``,  ``0.2.1-0``,  ``0.2-1``,  ``0.2-0`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends xz: ``>=5.2.6,<6.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install yacrd and update with:: mamba update yacrd To create a new environment, run:: mamba create --name myenvname yacrd with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/yacrd: (see `yacrd/tags`_ for valid values for ````) .. |downloads_yacrd| image:: https://img.shields.io/conda/dn/bioconda/yacrd.svg?style=flat :target: https://anaconda.org/bioconda/yacrd :alt: (downloads) .. |docker_yacrd| image:: https://quay.io/repository/biocontainers/yacrd/status :target: https://quay.io/repository/biocontainers/yacrd .. _`yacrd/tags`: https://quay.io/repository/biocontainers/yacrd?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/yacrd/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/yacrd/README.html