:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'yass' .. highlight: bash yass ==== .. conda:recipe:: yass :replaces_section_title: :noindex: YASS is a genomic similarity search tool\, for nucleic \(DNA\/RNA\) sequences in fasta or plain text format. :homepage: http://bioinfo.lifl.fr/yass/ :license: CeCILL Free Software License :recipe: /`yass `_/`meta.yaml `_ :links: biotools: :biotools:`yass` .. conda:package:: yass |downloads_yass| |docker_yass| :versions: ``1.14-6``,  ``1.14-5``,  ``1.14-4``,  ``1.14-3``,  ``1.14-2``,  ``1.14-1``,  ``1.14-0`` :depends libgcc-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install yass and update with:: mamba update yass To create a new environment, run:: mamba create --name myenvname yass with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/yass: (see `yass/tags`_ for valid values for ````) .. |downloads_yass| image:: https://img.shields.io/conda/dn/bioconda/yass.svg?style=flat :target: https://anaconda.org/bioconda/yass :alt: (downloads) .. |docker_yass| image:: https://quay.io/repository/biocontainers/yass/status :target: https://quay.io/repository/biocontainers/yass .. _`yass/tags`: https://quay.io/repository/biocontainers/yass?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/yass/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/yass/README.html