:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'zdb' .. highlight: bash zdb === .. conda:recipe:: zdb :replaces_section_title: :noindex: zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results :homepage: https://github.com/metagenlab/zDB/ :license: MIT :recipe: /`zdb `_/`meta.yaml `_ :links: biotools: :biotools:`zDB` .. conda:package:: zdb |downloads_zdb| |docker_zdb| :versions: .. raw:: html
1.2.3-01.2.1-11.2.1-01.2.0-01.1.1-01.1.0-01.0.7-01.0.4-01.0.3-0 ``1.2.3-0``,  ``1.2.1-1``,  ``1.2.1-0``,  ``1.2.0-0``,  ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.7-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.0-0`` .. raw:: html
:depends mamba: :depends nextflow: ``>=21.04.0,<=22.10.8`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install zdb and update with:: mamba update zdb To create a new environment, run:: mamba create --name myenvname zdb with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/zdb: (see `zdb/tags`_ for valid values for ````) .. |downloads_zdb| image:: https://img.shields.io/conda/dn/bioconda/zdb.svg?style=flat :target: https://anaconda.org/bioconda/zdb :alt: (downloads) .. |docker_zdb| image:: https://quay.io/repository/biocontainers/zdb/status :target: https://quay.io/repository/biocontainers/zdb .. _`zdb/tags`: https://quay.io/repository/biocontainers/zdb?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/zdb/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/zdb/README.html