recipe bioconductor-arraytools

geneChip Analysis Package

Homepage

https://bioconductor.org/packages/3.10/bioc/html/ArrayTools.html

License

LGPL (>= 2.0)

Recipe

/bioconductor-arraytools/meta.yaml

Links

biotools: arraytools, doi: 10.1038/nmeth.3252

This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3’ -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.

package bioconductor-arraytools

(downloads) docker_bioconductor-arraytools

Versions

1.46.0-0, 1.44.0-1, 1.42.0-0, 1.40.0-0, 1.38.0-0, 1.36.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arraytools

and update with:

conda update bioconductor-arraytools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arraytools:<tag>

(see bioconductor-arraytools/tags for valid values for <tag>)