bioconductor-arraytools

downloads

This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3’ -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.

Home http://bioconductor.org/packages/3.6/bioc/html/ArrayTools.html
Versions 1.36.0, 1.38.0
License LGPL (>= 2.0)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-arraytools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arraytools

and update with:

conda update bioconductor-arraytools

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-arraytools.