bioconductor-atlasrdf

downloads

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

Home http://bioconductor.org/packages/3.6/bioc/html/AtlasRDF.html
Versions 1.11.0, 1.12.0
License Apache License 2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-atlasrdf

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-atlasrdf

and update with:

conda update bioconductor-atlasrdf

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-atlasrdf.