recipe bioconductor-birta

Bayesian Inference of Regulation of Transcriptional Activity

Homepage

https://bioconductor.org/packages/3.10/bioc/html/birta.html

License

GPL (>= 2)

Recipe

/bioconductor-birta/meta.yaml

Links

biotools: birta, doi: 10.1093/bioinformatics/bts257

Expression levels of mRNA molecules are regulated by different processes, comprising inhibition or activation by transcription factors and post-transcriptional degradation by microRNAs. birta (Bayesian Inference of Regulation of Transcriptional Activity) uses the regulatory networks of TFs and miRNAs together with mRNA and miRNA expression data to predict switches in regulatory activity between two conditions. A Bayesian network is used to model the regulatory structure and Markov-Chain-Monte-Carlo is applied to sample the activity states.

package bioconductor-birta

(downloads) docker_bioconductor-birta

Versions

1.30.0-0, 1.28.0-1, 1.26.0-0, 1.24.0-0, 1.22.0-0, 1.20.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-birta

and update with:

conda update bioconductor-birta

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-birta:<tag>

(see bioconductor-birta/tags for valid values for <tag>)