bioconductor-bitseq

downloads

The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.

Home http://bioconductor.org/packages/3.7/bioc/html/BitSeq.html
Versions 1.24.0, 1.22.0, 1.20.0
License Artistic-2.0 + file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bitseq
Links biotools: bitseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bitseq

and update with:

conda update bioconductor-bitseq

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-bitseq.