The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.

Versions 1.24.0, 1.22.0, 1.20.0
License Artistic-2.0 + file LICENSE
Links biotools: bitseq


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bitseq

and update with:

conda update bioconductor-bitseq


A Docker container is available at