recipe bioconductor-bitseq

The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/BitSeq.html

License

Artistic-2.0 + file LICENSE

Recipe

/bioconductor-bitseq/meta.yaml

Links

biotools: bitseq

package bioconductor-bitseq

(downloads) docker_bioconductor-bitseq

Versions

1.28.0-1, 1.26.0-0, 1.24.0-0, 1.22.0-0, 1.20.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bitseq

and update with:

conda update bioconductor-bitseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bitseq:<tag>

(see bioconductor-bitseq/tags for valid values for <tag>)