recipe bioconductor-cancermutationanalysis

This package implements gene and gene-set level analysis methods for somatic mutation studies of cancer. The gene-level methods distinguish between driver genes (which play an active role in tumorigenesis) and passenger genes (which are mutated in tumor samples, but have no role in tumorigenesis) and incorporate a two-stage study design. The gene-set methods implement a patient-oriented approach, which calculates gene-set scores for each sample, then combines them across samples; a gene-oriented approach which uses the Wilcoxon test is also provided for comparison.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/CancerMutationAnalysis.html

License

GPL (>= 2) + file LICENSE

Recipe

/bioconductor-cancermutationanalysis/meta.yaml

Links

biotools: cancermutationanalysis, doi: 10.1007/978-1-62703-721-1_7

package bioconductor-cancermutationanalysis

(downloads) docker_bioconductor-cancermutationanalysis

Versions

1.26.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cancermutationanalysis

and update with:

conda update bioconductor-cancermutationanalysis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cancermutationanalysis:<tag>

(see bioconductor-cancermutationanalysis/tags for valid values for <tag>)