bioconductor-cancermutationanalysis

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This package implements gene and gene-set level analysis methods for somatic mutation studies of cancer. The gene-level methods distinguish between driver genes (which play an active role in tumorigenesis) and passenger genes (which are mutated in tumor samples, but have no role in tumorigenesis) and incorporate a two-stage study design. The gene-set methods implement a patient-oriented approach, which calculates gene-set scores for each sample, then combines them across samples; a gene-oriented approach which uses the Wilcoxon test is also provided for comparison.

Home http://bioconductor.org/packages/3.6/bioc/html/CancerMutationAnalysis.html
Versions 1.18.0, 1.20.0
License GPL (>= 2) + file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cancermutationanalysis

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cancermutationanalysis

and update with:

conda update bioconductor-cancermutationanalysis

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-cancermutationanalysis.