bioconductor-cand

downloads

Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.

Home http://bioconductor.org/packages/3.6/bioc/html/CAnD.html
Versions 1.10.0, 1.8.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cand

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cand

and update with:

conda update bioconductor-cand

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-cand.