recipe bioconductor-cand

Perform Chromosomal Ancestry Differences (CAnD) Analyses

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CAnD.html

License

Artistic-2.0

Recipe

/bioconductor-cand/meta.yaml

Links

biotools: cand, doi: 10.1534/genetics.115.184184

Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.

package bioconductor-cand

(downloads) docker_bioconductor-cand

Versions

1.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-01.10.0-01.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cand

and update with:

conda update bioconductor-cand

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cand:<tag>

(see bioconductor-cand/tags for valid values for <tag>)