recipe bioconductor-chimera

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/chimera.html

License

Artistic-2.0

Recipe

/bioconductor-chimera/meta.yaml

package bioconductor-chimera

(downloads) docker_bioconductor-chimera

Versions

1.24.0-0, 1.22.0-0, 1.20.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-bsgenome.hsapiens.ucsc.hg19

>=1.4.0,<1.5.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-homo.sapiens

>=1.3.0,<1.4.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

>=3.2.0,<3.3.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chimera

and update with:

conda update bioconductor-chimera

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimera:<tag>

(see bioconductor-chimera/tags for valid values for <tag>)