-
recipe
bioconductor-chimera
A package for secondary analysis of fusion products
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/chimera.html
- License
Artistic-2.0
- Recipe
This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.
-
package
bioconductor-chimera
¶ -
- Versions
1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
- Depends
bioconductor-annotationdbi
>=1.52.0,<1.53.0
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-bsgenome.hsapiens.ucsc.hg19
>=1.4.0,<1.5.0
bioconductor-genomicalignments
>=1.26.0,<1.27.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-homo.sapiens
>=1.3.0,<1.4.0
bioconductor-rsamtools
>=2.6.0,<2.7.0
bioconductor-txdb.hsapiens.ucsc.hg19.knowngene
>=3.2.0,<3.3.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-chimera
and update with:
conda update bioconductor-chimera
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chimera:<tag>
(see bioconductor-chimera/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chimera/README.html)