recipe bioconductor-chimera

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/chimera.html

License

Artistic-2.0

Recipe

/bioconductor-chimera/meta.yaml

package bioconductor-chimera

Versions

1.24.0-0, 1.22.0-0, 1.20.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-homo.sapiens >=1.3.0,<1.4.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chimera

and update with:

conda update bioconductor-chimera

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimera:<tag>

(see bioconductor-chimera/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chimera/README.html)