recipe bioconductor-chimera

A package for secondary analysis of fusion products

Homepage

https://bioconductor.org/packages/3.12/bioc/html/chimera.html

License

Artistic-2.0

Recipe

/bioconductor-chimera/meta.yaml

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

package bioconductor-chimera

Versions

1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0

Depends

• bioconductor-annotationdbi >=1.52.0,<1.53.0

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-homo.sapiens >=1.3.0,<1.4.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• r-base >=4.0,<4.1.0a0

• star

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chimera

and update with:

conda update bioconductor-chimera

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimera:<tag>

(see bioconductor-chimera/tags for valid values for <tag>)

Download stats

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