recipe bioconductor-chimera

A package for secondary analysis of fusion products

Homepage

https://bioconductor.org/packages/3.11/bioc/html/chimera.html

License

Artistic-2.0

Recipe

/bioconductor-chimera/meta.yaml

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

package bioconductor-chimera

Versions

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-homo.sapiens >=1.3.0,<1.4.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• star

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chimera

and update with:

conda update bioconductor-chimera

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimera:<tag>

(see bioconductor-chimera/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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