-
recipe
bioconductor-clonotyper High throughput analysis of T cell antigen receptor sequences
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/clonotypeR.html
- License
file LICENSE
- Recipe
- Links
biotools: clonotyper
High throughput analysis of T cell antigen receptor sequences The genes encoding T cell receptors are created by somatic recombination, generating an immense combination of V, (D) and J segments. Additional processes during the recombination create extra sequence diversity between the V an J segments. Collectively, this hyper-variable region is called the CDR3 loop. The purpose of this package is to process and quantitatively analyse millions of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.
-
package
bioconductor-clonotyper¶ 
- Versions
1.28.0-0,1.26.0-0,1.24.0-0,1.22.0-1,1.22.0-0,1.20.0-0,1.18.0-0,1.16.0-0- Depends
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-clonotyper
and update with:
conda update bioconductor-clonotyper
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-clonotyper:<tag>
(see bioconductor-clonotyper/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-clonotyper/README.html)