- recipe bioconductor-copywriter
Copy number information from targeted sequencing using off-target reads
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/CopywriteR.html
- License:
GPL-2
- Recipe:
- Links:
biotools: copywriter, doi: 10.1186/s13059-015-0617-1
CopywriteR extracts DNA copy number information from targeted sequencing by utiizing off-target reads. It allows for extracting uniformly distributed copy number information, can be used without reference, and can be applied to sequencing data obtained from various techniques including chromatin immunoprecipitation and target enrichment on small gene panels. Thereby, CopywriteR constitutes a widely applicable alternative to available copy number detection tools.
- package bioconductor-copywriter¶
-
- Versions:
2.26.0-0
,2.24.0-0
,2.22.0-1
,2.22.0-0
,2.20.0-0
,2.18.0-1
,2.16.0-1
,2.14.0-0
,2.12.0-0
,2.26.0-0
,2.24.0-0
,2.22.0-1
,2.22.0-0
,2.20.0-0
,2.18.0-1
,2.16.0-1
,2.14.0-0
,2.12.0-0
,2.10.0-0
- Depends:
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-chipseq
>=1.44.0,<1.45.0
bioconductor-copyhelper
>=1.26.0,<1.27.0
bioconductor-dnacopy
>=1.68.0,<1.69.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-copywriter
and update with:
conda update bioconductor-copywriter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-copywriter:<tag>
(see bioconductor-copywriter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-copywriter/README.html)