recipe bioconductor-cormut

Detect the correlated mutations based on selection pressure

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CorMut.html

License

GPL-2

Recipe

/bioconductor-cormut/meta.yaml

CorMut provides functions for computing kaks for individual sites or specific amino acids and detecting correlated mutations among them. Three methods are provided for detecting correlated mutations ,including conditional selection pressure, mutual information and Jaccard index. The computation consists of two steps: First, the positive selection sites are detected; Second, the mutation correlations are computed among the positive selection sites. Note that the first step is optional. Meanwhile, CorMut facilitates the comparison of the correlated mutations between two conditions by the means of correlated mutation network. The reference sequence should be the first sequence of the sequence file, and does not allow the presence of gap.

package bioconductor-cormut

(downloads) docker_bioconductor-cormut

Versions

1.29.0-0, 1.28.0-0, 1.26.0-1, 1.26.0-0, 1.24.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cormut

and update with:

conda update bioconductor-cormut

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cormut:<tag>

(see bioconductor-cormut/tags for valid values for <tag>)