recipe bioconductor-countclust

Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models

Homepage

https://bioconductor.org/packages/3.10/bioc/html/CountClust.html

License

GPL (>= 2)

Recipe

/bioconductor-countclust/meta.yaml

Fits grade of membership models (GoM, also known as admixture models) to cluster RNA-seq gene expression count data, identifies characteristic genes driving cluster memberships, and provides a visual summary of the cluster memberships.

package bioconductor-countclust

(downloads) docker_bioconductor-countclust

Versions

1.14.0-0, 1.12.0-1, 1.12.0-0, 1.10.1-0, 1.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-countclust

and update with:

conda update bioconductor-countclust

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-countclust:<tag>

(see bioconductor-countclust/tags for valid values for <tag>)