- recipe bioconductor-ctggem
Generating Tree Hierarchy Visualizations from Gene Expression Data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/ctgGEM.html
- License:
GPL(>=2)
- Recipe:
Cell Tree Generator for Gene Expression Matrices (ctgGEM) streamlines the building of cell-state hierarchies from single-cell gene expression data across multiple existing tools for improved comparability and reproducibility. It supports pseudotemporal ordering algorithms and visualization tools from monocle, cellTree, TSCAN, sincell, and destiny, and provides a unified output format for integration with downstream data analysis workflows and Cytoscape.
- package bioconductor-ctggem¶
-
- Versions:
1.6.0-0
,1.2.0-1
,1.2.0-0
,0.99.3-0
- Depends:
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-monocle
>=2.22.0,<2.23.0
bioconductor-sincell
>=1.26.0,<1.27.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-tscan
>=1.32.0,<1.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ctggem
and update with:
conda update bioconductor-ctggem
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ctggem:<tag>
(see bioconductor-ctggem/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ctggem/README.html)