recipe bioconductor-ctggem

Generating Tree Hierarchy Visualizations from Gene Expression Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ctgGEM.html

License

GPL(>=2)

Recipe

/bioconductor-ctggem/meta.yaml

Cell Tree Generator for Gene Expression Matrices (ctgGEM) streamlines the building of cell-state hierarchies from single-cell gene expression data across multiple existing tools for improved comparability and reproducibility. It supports pseudotemporal ordering algorithms and visualization tools from monocle, cellTree, TSCAN, sincell, and destiny, and provides a unified output format for integration with downstream data analysis workflows and Cytoscape.

package bioconductor-ctggem

(downloads) docker_bioconductor-ctggem

Versions

0.99.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ctggem

and update with:

conda update bioconductor-ctggem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ctggem:<tag>

(see bioconductor-ctggem/tags for valid values for <tag>)