recipe bioconductor-deco

Decomposing Heterogeneous Cohorts using Omic Data Profiling

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/deco.html

License:

GPL (>=3)

Recipe:

/bioconductor-deco/meta.yaml

This package discovers differential features in hetero- and homogeneous omic data by a two-step method including subsampling LIMMA and NSCA. DECO reveals feature associations to hidden subclasses not exclusively related to higher deregulation levels.

package bioconductor-deco

Versions:

1.13.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-made4 >=1.72.0,<1.73.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-ade4

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-foreign

• r-gdata

• r-ggplot2

• r-gplots

• r-gridextra

• r-locfit

• r-rcolorbrewer

• r-reshape2

• r-scatterplot3d

• r-sfsmisc

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-deco

and update with:

conda update bioconductor-deco

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deco:<tag>

(see bioconductor-deco/tags for valid values for <tag>)

Download stats

Link to this page

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