- recipe bioconductor-diffloop
Identifying differential DNA loops from chromatin topology data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/diffloop.html
- License
MIT + file LICENSE
- Recipe
- Links
biotools: diffloop, doi: 10.1101/087338
A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.
- package bioconductor-diffloop¶
-
- Versions
1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-sushi
>=1.31.0,<1.32.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-diffloop
and update with:
conda update bioconductor-diffloop
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-diffloop:<tag>
(see bioconductor-diffloop/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-diffloop/README.html)