recipe bioconductor-diffloop

Identifying differential DNA loops from chromatin topology data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/diffloop.html

License

MIT + file LICENSE

Recipe

/bioconductor-diffloop/meta.yaml

Links

biotools: diffloop, doi: 10.1101/087338

A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.

package bioconductor-diffloop

Versions

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0, 

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-sushi >=1.31.0,<1.32.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-foreach

• r-ggplot2

• r-locfit

• r-matrixstats

• r-pbapply

• r-plyr

• r-readr

• r-reshape2

• r-statmod

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-diffloop

and update with:

conda update bioconductor-diffloop

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffloop:<tag>

(see bioconductor-diffloop/tags for valid values for <tag>)

Download stats

Link to this page

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