recipe bioconductor-diffloop

Identifying differential DNA loops from chromatin topology data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/diffloop.html

License

MIT + file LICENSE

Recipe

/bioconductor-diffloop/meta.yaml

Links

biotools: diffloop, doi: 10.1101/087338

A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.

package bioconductor-diffloop

Versions

1.14.0-0, 1.12.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biomart >=2.42.0,<2.43.0

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-rtracklayer >=1.46.0,<1.47.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-sushi >=1.23.0,<1.24.0

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-dplyr

• r-foreach

• r-ggplot2

• r-locfit

• r-matrixstats

• r-pbapply

• r-plyr

• r-readr

• r-reshape2

• r-statmod

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-diffloop

and update with:

conda update bioconductor-diffloop

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffloop:<tag>

(see bioconductor-diffloop/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-diffloop/README.html)