recipe bioconductor-diffloop

Identifying differential DNA loops from chromatin topology data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/diffloop.html

License

MIT + file LICENSE

Recipe

/bioconductor-diffloop/meta.yaml

Links

biotools: diffloop, doi: 10.1101/087338

A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.

package bioconductor-diffloop

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-edger >=3.30.0,<3.31.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-sushi >=1.26.0,<1.27.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dplyr

• r-foreach

• r-ggplot2

• r-locfit

• r-matrixstats

• r-pbapply

• r-plyr

• r-readr

• r-reshape2

• r-statmod

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-diffloop

and update with:

conda update bioconductor-diffloop

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffloop:<tag>

(see bioconductor-diffloop/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-diffloop/README.html)