bioconductor-dsimer

downloads

dSimer is an R package which provides computation of nine methods for measuring disease-disease similarity, including a standard cosine similarity measure and eight function-based methods. The disease similarity matrix obtained from these nine methods can be visualized through heatmap and network. Biological data widely used in disease-disease associations study are also provided by dSimer.

Home http://bioconductor.org/packages/3.7/bioc/html/dSimer.html
Versions 1.6.0, 1.4.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-dsimer
Links biotools: dsimer, doi: 10.1038/nmeth.3252

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dsimer

and update with:

conda update bioconductor-dsimer

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-dsimer.