- recipe bioconductor-findmyfriends
Microbial Comparative Genomics in R
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/FindMyFriends.html
- License
GPL (>=2)
- Recipe
- Links
biotools: findmyfriends, doi: 10.1038/nmeth.3252
A framework for doing microbial comparative genomics in R. The main purpose of the package is assisting in the creation of pangenome matrices where genes from related organisms are grouped by similarity, as well as the analysis of these data. FindMyFriends provides many novel approaches to doing pangenome analysis and supports a gene grouping algorithm that scales linearly, thus making the creation of huge pangenomes feasible.
- package bioconductor-findmyfriends¶
-
- Versions
1.23.0-1
,1.23.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.23.0-1
,1.23.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-kebabs
>=1.28.0,<1.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-findmyfriends
and update with:
conda update bioconductor-findmyfriends
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-findmyfriends:<tag>
(see bioconductor-findmyfriends/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-findmyfriends/README.html)