recipe bioconductor-flipflop

Flipflop discovers which isoforms of a gene are expressed in a given sample together with their abundances, based on RNA-Seq read data. It takes an alignment file in SAM format as input. It can also discover transcripts from several samples simultaneously, increasing statistical power.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/flipflop.html

License

GPL-3

Recipe

/bioconductor-flipflop/meta.yaml

Links

biotools: flipflop

package bioconductor-flipflop

(downloads) docker_bioconductor-flipflop

Versions

1.18.0-0, 1.16.0-0, 1.14.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flipflop

and update with:

conda update bioconductor-flipflop

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flipflop:<tag>

(see bioconductor-flipflop/tags for valid values for <tag>)