recipe bioconductor-flowfit

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/flowFit.html

License

Artistic-2.0

Recipe

/bioconductor-flowfit/meta.yaml

package bioconductor-flowfit

(downloads) docker_bioconductor-flowfit

Versions

1.20.1-0

Depends bioconductor-flowcore

>=1.48.0,<1.49.0

Depends bioconductor-flowviz

>=1.46.0,<1.47.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-gplots

Depends r-kza

Depends r-minpack.lm

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flowfit

and update with:

conda update bioconductor-flowfit

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowfit:<tag>

(see bioconductor-flowfit/tags for valid values for <tag>)