recipe bioconductor-fourcseq

Package analyse 4C sequencing data



GPL (>= 3)




biotools: fourcseq

FourCSeq is an R package dedicated to the analysis of (multiplexed) 4C sequencing data. The package provides a pipeline to detect specific interactions between DNA elements and identify differential interactions between conditions. The statistical analysis in R starts with individual bam files for each sample as inputs. To obtain these files, the package contains a python script (extdata/python/ to demultiplex libraries and trim off primer sequences. With a standard alignment software the required bam files can be then be generated.

package bioconductor-fourcseq

(downloads) docker_bioconductor-fourcseq


1.21.0-0, 1.20.0-0, 1.18.0-1, 1.16.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0, 1.4.0-1, 1.4.0-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fourcseq

and update with:

conda update bioconductor-fourcseq

or use the docker container:

docker pull<tag>

(see bioconductor-fourcseq/tags for valid values for <tag>)