recipe bioconductor-geecc

Gene Set Enrichment Analysis Extended to Contingency Cubes

Homepage

https://bioconductor.org/packages/3.11/bioc/html/geecc.html

License

GPL (>= 2)

Recipe

/bioconductor-geecc/meta.yaml

Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosomal position, phylostrata, divergence-strata, ….

package bioconductor-geecc

(downloads) docker_bioconductor-geecc

Versions

1.21.0-0, 1.20.0-0, 1.18.0-1, 1.18.0-0, 1.16.1-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geecc

and update with:

conda update bioconductor-geecc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geecc:<tag>

(see bioconductor-geecc/tags for valid values for <tag>)