recipe bioconductor-geneselector

The term ‘GeneSelector’ refers to a filter selecting those genes which are consistently identified as differentially expressed using various statistical procedures. ‘Selected’ genes are those present at the top of the list in various ranking methods (currently 14). In addition, the stability of the findings can be taken into account in the final ranking by examining perturbed versions of the original data set, e.g. by leaving samples, swapping class labels, generating bootstrap replicates or adding noise. Given multiple ranked lists, one can use aggregation methods in order to find a synthesis.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/GeneSelector.html

License

GPL (>= 2)

Recipe

/bioconductor-geneselector/meta.yaml

Links

biotools: geneselector, doi: 10.1093/bib/bbp034

package bioconductor-geneselector

(downloads) docker_bioconductor-geneselector

Versions

2.32.0-0, 2.30.0-0, 2.28.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends bioconductor-siggenes

>=1.56.0,<1.57.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-samr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geneselector

and update with:

conda update bioconductor-geneselector

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geneselector:<tag>

(see bioconductor-geneselector/tags for valid values for <tag>)