recipe bioconductor-genotypeeval

QA/QC of a gVCF or VCF file

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/genotypeeval.html

License:

file LICENSE

Recipe:

/bioconductor-genotypeeval/meta.yaml

Takes in a gVCF or VCF and reports metrics to assess quality of calls.

package bioconductor-genotypeeval

Versions:

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genotypeeval

and update with:

conda update bioconductor-genotypeeval

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genotypeeval:<tag>

(see bioconductor-genotypeeval/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genotypeeval/README.html)